Useful R functions

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Sandbox vectors

Let’s define some vectors which can be used for demonstrations:

manyNumbers <- sample( 1:1000, 20 )
manyNumbers

 [1] 977 680 619 890 411 472 621 634 833 537 600 298 639 737 500 344 686  15 273 719

manyNumbersWithNA <- sample( c( NA, NA, NA, manyNumbers ) )
manyNumbersWithNA

 [1] 537 298 619 977 344 621 411 600 472 833 686 737 634  NA 719  NA 680 273 500  15 639  NA 890

duplicatedNumbers <- sample( 1:5, 10, replace = TRUE )
duplicatedNumbers

 [1] 1 1 5 3 3 4 5 1 1 3

letters

 [1] "a" "b" "c" "d" "e" "f" "g" "h" "i" "j" "k" "l" "m" "n" "o" "p" "q" "r" "s" "t" "u" "v" "w" "x" "y" "z"

LETTERS

 [1] "A" "B" "C" "D" "E" "F" "G" "H" "I" "J" "K" "L" "M" "N" "O" "P" "Q" "R" "S" "T" "U" "V" "W" "X" "Y" "Z"

mixedLetters <- c( sample( letters, 5 ), sample( LETTERS, 5 ) )
mixedLetters

 [1] "o" "b" "q" "y" "s" "U" "H" "X" "N" "F"

Are all/any elements TRUE

• Input: logical vector
• Output: single logical value
• Task: try, understand what happens when you use manyNumbersWithNA instead of manyNumbers.

all( manyNumbers <= 1000 )

[1] TRUE

all( manyNumbers <= 500 )

[1] FALSE

any( manyNumbers > 1000 )

[1] FALSE

any( manyNumbers > 500 )

[1] TRUE

all( !is.na( manyNumbers ) )

[1] TRUE

any( is.na( manyNumbers ) )

[1] FALSE

Which elements are TRUE

Input: logical vector Output: vector of numbers (positions)

which( manyNumbers > 900 )

[1] 1

which( manyNumbersWithNA > 900 )

[1] 4

which( is.na( manyNumbersWithNA ) )

[1] 14 16 22

Filtering vector elements

• Input: any vector and filtering condition
• Output: elements of the input vector
• Note: several ways to get the same effect

manyNumbers[ manyNumbers > 900 ] # indexing by logical vector

[1] 977

manyNumbers[ which( manyNumbers > 900 ) ] # indexing by positions

[1] 977

somePositions <- which( manyNumbers > 900 )
manyNumbers[ somePositions ]

[1] 977

Are some elements among other elements

• Input: two vectors
• Output: a logical vector corresponding to the first input vector

"A" %in% LETTERS

[1] TRUE

c( "X", "Y", "Z" ) %in% LETTERS

[1] TRUE TRUE TRUE

all( c( "X", "Y", "Z" ) %in% LETTERS )

[1] TRUE

all( mixedLetters %in% LETTERS )

[1] FALSE

any( mixedLetters %in% LETTERS )

[1] TRUE

mixedLetters[ mixedLetters %in% LETTERS ]

[1] "U" "H" "X" "N" "F"

mixedLetters[ !( mixedLetters %in% LETTERS ) ]

[1] "o" "b" "q" "y" "s"

manyNumbers %in% 300:600

 [1] FALSE FALSE FALSE FALSE  TRUE  TRUE FALSE FALSE FALSE  TRUE  TRUE FALSE FALSE FALSE  TRUE  TRUE FALSE FALSE FALSE FALSE

which( manyNumbers %in% 300:600 )

[1]  5  6 10 11 15 16

sum( manyNumbers %in% 300:600 )

[1] 6

Pick one of two (three) depending on condition

• Input: a logical vector and two vectors additional vectors (for TRUE, for FALSE)
• Output: elements of the additional vectors
• Note: it can take care of NAs

if_else( manyNumbersWithNA >= 500, "large", "small" )

 [1] "large" "small" "large" "large" "small" "large" "small" "large" "small" "large" "large" "large" "large" NA      "large" NA      "large" "small" "large" "small" "large" NA     
[23] "large"

if_else( manyNumbersWithNA >= 500, "large", "small", "UNKNOWN" )

 [1] "large"   "small"   "large"   "large"   "small"   "large"   "small"   "large"   "small"   "large"   "large"   "large"   "large"   "UNKNOWN" "large"   "UNKNOWN" "large"   "small"  
[19] "large"   "small"   "large"   "UNKNOWN" "large"  

# here integer 0L is needed instead of real 0.0 
# manyNumbersWithNA contains integer numbers and the method complains
if_else( manyNumbersWithNA >= 500, manyNumbersWithNA, 0L ) 

 [1] 537   0 619 977   0 621   0 600   0 833 686 737 634  NA 719  NA 680   0 500   0 639  NA 890

Duplicates and unique elements

• Input: a vector

unique( duplicatedNumbers )

[1] 1 5 3 4

unique( c( NA, duplicatedNumbers, NA ) )

[1] NA  1  5  3  4

duplicated( duplicatedNumbers )

 [1] FALSE  TRUE FALSE FALSE  TRUE FALSE  TRUE  TRUE  TRUE  TRUE

Positions of max/min elements

which.max( manyNumbersWithNA )

[1] 4

manyNumbersWithNA[ which.max( manyNumbersWithNA ) ]

[1] 977

which.min( manyNumbersWithNA )

[1] 20

manyNumbersWithNA[ which.min( manyNumbersWithNA ) ]

[1] 15

range( manyNumbersWithNA, na.rm = TRUE )

[1]  15 977

Sorting/ordering of vectors

manyNumbersWithNA

 [1] 537 298 619 977 344 621 411 600 472 833 686 737 634  NA 719  NA 680 273 500  15 639  NA 890

sort( manyNumbersWithNA )

 [1]  15 273 298 344 411 472 500 537 600 619 621 634 639 680 686 719 737 833 890 977

sort( manyNumbersWithNA, na.last = TRUE )

 [1]  15 273 298 344 411 472 500 537 600 619 621 634 639 680 686 719 737 833 890 977  NA  NA  NA

sort( manyNumbersWithNA, na.last = TRUE, decreasing = TRUE )

 [1] 977 890 833 737 719 686 680 639 634 621 619 600 537 500 472 411 344 298 273  15  NA  NA  NA

manyNumbersWithNA[1:5]

[1] 537 298 619 977 344

order( manyNumbersWithNA[1:5] )

[1] 2 5 1 3 4

rank( manyNumbersWithNA[1:5] )

[1] 3 1 4 5 2

sort( mixedLetters )

 [1] "b" "F" "H" "N" "o" "q" "s" "U" "X" "y"

Ranking of vectors

manyDuplicates <- sample( 10:15, 10, replace = TRUE )
rank( manyDuplicates )

 [1] 7.5 9.5 2.5 5.0 6.0 7.5 2.5 2.5 2.5 9.5

rank( manyDuplicates, ties.method = "min" )

 [1] 7 9 1 5 6 7 1 1 1 9

rank( manyDuplicates, ties.method = "random" )

 [1]  7 10  1  5  6  8  2  4  3  9

Rounding numbers

v <- c( -1, -0.5, 0, 0.5, 1, rnorm( 10 ) )
v

 [1] -1.00000000 -0.50000000  0.00000000  0.50000000  1.00000000  0.40792859  0.91978336  1.48008294 -1.12321738 -0.09543070 -0.15947533 -2.02231691  0.01152684  0.41247024  1.23684199

round( v, 0 )

 [1] -1  0  0  0  1  0  1  1 -1  0  0 -2  0  0  1

round( v, 1 )

 [1] -1.0 -0.5  0.0  0.5  1.0  0.4  0.9  1.5 -1.1 -0.1 -0.2 -2.0  0.0  0.4  1.2

round( v, 2 )

 [1] -1.00 -0.50  0.00  0.50  1.00  0.41  0.92  1.48 -1.12 -0.10 -0.16 -2.02  0.01  0.41  1.24

floor( v )

 [1] -1 -1  0  0  1  0  0  1 -2 -1 -1 -3  0  0  1

ceiling( v )

 [1] -1  0  0  1  1  1  1  2 -1  0  0 -2  1  1  2

Naming vector elements

heights <- c( Amy = 166, Eve = 170, Bob = 177 )
heights

Amy Eve Bob 
166 170 177 

names( heights )

[1] "Amy" "Eve" "Bob"

names( heights ) <- c( "AMY", "EVE", "BOB" )
heights

AMY EVE BOB 
166 170 177 

heights[[ "EVE" ]]

[1] 170

Generating grids

expand_grid( x = c( 1:3, NA ), y = c( "a", "b" ) )

# A tibble: 8 x 2
      x y    
  <int> <chr>
1     1 a    
2     1 b    
3     2 a    
4     2 b    
5     3 a    
6     3 b    
7    NA a    
8    NA b    

Generating combinations

combn( c( "a", "b", "c", "d", "e" ), m = 2, simplify = TRUE )

     [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
[1,] "a"  "a"  "a"  "a"  "b"  "b"  "b"  "c"  "c"  "d"  
[2,] "b"  "c"  "d"  "e"  "c"  "d"  "e"  "d"  "e"  "e"  

combn( c( "a", "b", "c", "d", "e" ), m = 3, simplify = TRUE )

     [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
[1,] "a"  "a"  "a"  "a"  "a"  "a"  "b"  "b"  "b"  "c"  
[2,] "b"  "b"  "b"  "c"  "c"  "d"  "c"  "c"  "d"  "d"  
[3,] "c"  "d"  "e"  "d"  "e"  "e"  "d"  "e"  "e"  "e"  

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